| Count | Slim Id | Slim Id | Slim name | Color Code | Color Name | Text | % pop. | Note |
| 6232 | MOD:00677 | | hydroxylated residue | ffe119 | yellow | black | 100 | |
| 4533 | | MOD:00696 | phosphorylated residue | 4363d8 | blue | white | 100 | |
| 3956 | MOD:00764 | MOD:00764 | glycoconjugated residue | dcbeff | lavender | black | 99.99 | |
| 1109 | MOD:----- | MOD:----- | protein or peptide linked residue | f58231 | orange | white | 99.99 | |
| 817 | | MOD:----- | sequence variant | 000075 | navy | white | 99.99 | |
| 437 | MOD:01152 | MOD:01152 | carboxylated residue | fabed4 | pink | black | 99 | | |
| 270 | MOD:02078 | MOD:02078 | acetylated residue | f032e6 | magenta | white | 99 | | |
| 268 | MOD:----- | MOD:----- | lipo/acylated residue | 42d4f4 | cyan | black | 99 | | |
| 240 | | MOD:----- | other | 800000 | maroon | white | 99.99 | Keeps current color |
| 226 | MOD:00427 | MOD:00427 | methylated residue | 3cb44b | green | white | 99 | | |
| 205 | | MOD:00033 | *crosslinked residues | 469990 | teal | white | 99 | | |
| 189 | MOD:00703 | | isoprenylated residue | aaffc3 | mint | black | 99 | | |
| 135 | MOD:00674 | | *amidated residue | fffac8 | beige | black | 99 | | |
| 48 | | MOD:00701 | nucleotide or nucleic acid modified residue | 9A6324 | brown | white | 99 | | |
| 43 | | MOD:00675 | oxidized residue | 911eb4 | purple | white | 95 | | |
| 20 | MOD:00649 | | acylated residue | ffd8b1 | apricot | black | 95 | | |
| -- | MOD:----- | MOD:----- | conserved site | a9a9a9 | [gray] | white | 100 | Keeps current color; Will be in all alignments |
| -- | MOD:----- | MOD:----- | conserved substitution | cccccc | [light gray] | black | 100 | Keeps current color |
| -- | MOD:----- | MOD:----- | (mouse-over column highlight) | e6194b | red | bl/wh | 99 | Need a color that works with both black text and white text |
| -- | | MOD:----- | NOT USED | 808000 | olive | white | 95 | |
| -- | MOD:----- | | NOT USED | bfef45 | lime | black | 95 | |
Note: bgcolor/text combinations that definitely don't work were deleted.
Examples:
PR:000008598 - conserved site, phosphorylated, acetylated, methylated, protein-linked, nuc-linked
PR:000025876 - conserved site, phosphorylated, glycoconjugated
PR:000007294 - conserved site, hydroxylated, carboxylated
PR:000028708 - conserved site, sequence variant
PR:P60766 - conserved site, isoprenylated, other
PR:000001750 - conserved site, phosphorylated, lipoacylated
PR:000028932 - conserved site, oxidized
PR:000024003 - conserved site, acetylated, acylated
No current example for:
- crosslinked
- amidated
Note: It's unclear as to the meaning of 'Conserved substitution' in the alignment. If intended to mean 'conservative substitution', then PR:000045440 (when visualized within the context of PR:000028708) would be an example (Ser to Thr).
If indeed 'conserved substitution' is meant (that is, a substitution that exists in multiple proteoforms), then PR:000000278 (after choosing 'align across species') would be an example (though the position currently just shows the seqvar color).