Representative Proteomes (RP) Release 2024_04, 7-24-2024 ----------------------------------------------------- Totoal # of complete proteomes: 30218 # of proteomes in RP75(CMT>=75%): 18367 # of proteomes in RP55(CMT>=55%): 11753 # of proteomes in RP35(CMT>=35%): 5942 # of proteomes in RP15(CMT>=15%): 1906 Representative Proteomes are proteomes that can best represent all complete proteomes in terms of the majority of the sequence space and information. We provide four sets of Representative Proteomes based on co-membership threshold (CMT) cut-off to allow users to decrease or increase the granularity of the sequence space based on their requirements (PMID: 21556138). Home page: http://pir.georgetown.edu/rps/ Browse: http://pir.georgetown.edu/rps/browse.html BLAST search: http://pir.georgetown.edu/rps/blast_rp.shtml Make your own RP sequence file: http://pir.georgetown.edu/rps/mk_rp.shtml FTP download: ftp://ftp.pir.georgetown.edu/databases/rps/ Sequence downloads at different cut-offs and for all complete proteomes (one protein per gene). Text files of proteome clusters at different co-membership threshold cut-offs. ftp://ftp.pir.georgetown.edu/databases/rps/rg Text files of genome clusters at different co-membership threshold cut-offs. Representative genomes (RGs) are constructed based on the corresponding RPs. ------------------------------------ Protein Information Resource (PIR) Georgetown University Medical Center 3300 Whitehaven Street, NW, Suite 1200 Washington, DC 20007, USA Email: pirmail@georgetown.edu