| Protein name dictionaries | BioThesaurus: A protein entity dictionary constructed using online resources
(download here)
Dictionary (4.7 Mb),
a protein name list derived from iProClass integrated protein knowledgebase |
Word token dictionaries
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Protein name tagging guidelines
and tagged corpora |
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| Protein ontology | Ontology for protein classes and protein objects:
PRO |
| eFIP data set |
Corpus of 96 randomly selected abstracts from all PubMed abstracts containing sentences with trigger words for both phosphorylation and interaction mentions. The test set was manually curated by PRO curators (according to the Manual Annotation Guidelines for eFIP) to benchmark how well eFIP performs on a broad set of proteins and abstracts mentioning phosphorylation and interaction events.
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