Table 2 Post-Translational Modifications
Associated with Homology Domains
RESID:AA0008
glycine radical
Feature:
Active site: Gly (stable glycyl radical)
Homology
domains: (not exclusive)
Domain: glycyl radical homology
RESID:AA0026
L-erythro-beta-hydroxyasparagine
Feature:
Modified site: erythro-beta-hydroxyasparagine (Asn)
RESID:AA0027 L-erythro-beta-hydroxyaspartic acid
Feature:
Modified site: erythro-beta-hydroxyaspartic acid
(Asp)
Homology
domains:
Domain: EGF homology
RESID:AA0032
L-gamma-carboxyglutamic acid
Feature:
Modified site: gamma-carboxyglutamic acid (Glu)
Homology
domains: (not exclusive)
Domain: Gla domain homology
RESID:AA0073
3'-methyl-L-histidine
Feature:
Modified site: 3'-methylhistidine (His)
Homology domains: (not exclusive)
Domain: myosin motor domain homology
RESID:AA0144
3'-(8alpha-FAD)-L-histidine
Feature:
Modified site: 3'-FAD-histidine (His)
Homology
domains: (probably not exclusive)
Domain: fumarate reductase flavoprotein homology
RESID:AA0150
O-phosphopantetheine-L-serine
Feature:
Binding site: phosphopantetheine (Ser) (covalent)
Homology domains: (exclusive)
Domain: acyl carrier protein homology
Feature:
Binding site: biotin (Lys) (covalent)
RESID:AA0118 N6-lipoyl-L-lysine
Feature:
Binding site: lipoamide
(Lys) (covalent)
Homology domains: (not exclusive, may not be
homogeneous)
Domain: lipoyl/biotin-binding homology
RESID:AA0119
N6-pyridoxal phosphate-L-lysine
Feature:
Binding site: pyridoxal phosphate (Lys) (covalent)
Homology
domains:
Domain: glycine C-acetyltransferase homology
Domain: [acyl-carrier-protein] S-malonyltransferase
homology
Domain: animal histidine decarboxylase homology
Domain: tryptophan synthase beta chain homology
RESID:AA0133
S-phytochromobilin-L-cysteine
Feature:
Binding site: phytochromobilin (Cys) (covalent)
Homology domains: (exclusive)
Domain: phytochrome homology
RESID:AA0141
L-cysteinyl homocitryl molybdenum-heptairon-nonasulfide
Feature:
Binding site: homocitryl Mo-7Fe-8S cluster (Cys)
(covalent)
Homology domains: (exclusive)
Domain: nitrogenase vanadium-iron protein alpha
chain homology
RESID:AA0142
L-cysteinyl molybdopterin
Feature:
Binding site: molybdopterin (Cys) (covalent)
Homology domains: (not exclusive)
Domain: molybdopterin-binding domain homology
RESID:AA0234
S-methyl-L-cysteine
Feature:
Binding site: methyl (Cys) (covalent)
Homology
domains: (probably not exclusive)
Domain: methylated-DNA--protein-cysteine
S-methyltransferase homology
RESID:AA0134
heme-bis-L-cysteine
RESID:AA0135 heme-L-cysteine
Feature:
Binding site: heme (Cys) (covalent)
Homology domains:
Domain: cytochrome b6 homology
Domain: cytochrome c homology
Domain: cytochrome c1 heme protein homology
Domain: cytochrome c3 homology
Domain: cytochrome c6 homology
Domain: nirT homology
Domain: Pseudomonas
cytochrome-c peroxidase homology
Domain: T. aquaticus
cytochrome c552 homology
RESID:AA0136
tetrakis-L-cysteinyl iron
Feature:
Binding site: iron (Cys)
Homology
domains:
Domain: desulforedoxin
homology
Domain: rubredoxin homology
RESID: AA0137
tetrakis-L-cysteinyl diiron disulfide
Feature:
Binding site: 2Fe-2S cluster (Cys) (covalent)
Homology
domains: (not exclusive)
Domain: ferredoxin [2Fe-2S] homology
RESID: AA0225
bis-L-cysteinyl bis-L-histidino diiron disulfide
Feature:
Binding site: 2Fe-2S cluster (Cys, His, Cys, His)
(covalent)
Homology
domains: (exclusive)
Domain: Rieske [2Fe-2S] homology
RESID:AA0139
tris-L-cysteinyl triiron tetrasulfide
Feature:
Binding site: 3Fe-4S cluster (Cys) (covalent)
RESID:AA0140 tetrakis-L-cysteinyl tetrairon tetrasulfide
Feature:
Binding site: 4Fe-4S cluster (Cys) (covalent)
Homology domains: (not exclusive)
Domain: ferredoxin 2[4Fe-4S] homology