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| Oral
Presentations |
Protein Bioinformatics – Advances and Challenges
Sona Vasudevan and Peter McGarvey
Presented at Georgetown University Medical Center, May 15, 2007 |
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Presentation
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Framework for a Protein Ontology
Darren Natale
Presented at the ACM First International Workshop on Text Mining in Bioinformatics (TMBIO 2006),
which is part of the ACM Fifteenth Conference on Information and
Knowledge Management (CIKM), Arlington, VA, November 10, 2006 |
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Presentation |
Bioinformatics at NIAID Biodefense Proteomics
Administrative Resource Center
McGarvey P. and Wu CH.
Presented at the 4th Annual World Congress of Human Proteome
Organization (HUPO-2005), Munich, Germany, 2005 |
Abstract
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Presentation
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PIR: A Comprehensive Resource
for Functional Analysis of Protein Sequences and Families
Anastasia Nikolskaya/ Lai-Su Yeh
13th Annual International Conference on Intelligence Systems for
Molecular Biology, Detroit, MI, June 26-29, 2005 |
Abstract
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caBIG Grid-Enablement of
PIR/UniProt Data Source
Baris Suzek
International Symposium on Web Services for Computational Biology and
Bioinformatics , Blacksburg, VA, May 26-27, 2005 |
Abstract |
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The PIRSF Protein
Classification System as a Basis for Automated UniProt Protein
Annotation
Darren Natale
2nd annual International Conference on Bioinformatics and Computational
Biology (Icobicobi), Angra dos Reis in Brazil, October 25-28, 2004 |
Abstract
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Presentation
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Complementing Gene Ontology
with PIRSF Classification-based Protein Ontology
Anastasia Nikolskaya
Standards and Ontologies For Functional Genomics (SOFG) Conference,
Philadelphia, PA, October 23-26, 2004 |
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Presentation
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PIRSF Protein Classification
System And Sequence Annotation
Anastasia Nikolskaya
21th Mid-Atlantic Plant Molecular Biology Society Conference (MAPMBS
2004), Laurel, MD, August 19-20, 2004 |
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Presentation
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PIRSF Protein Classification
System
Raja Mazumder
ISMB/ECCB Conference, Glasgow, UK, July 31-August 4, 2004 |
Abstract
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| Abstracts/Poster Presentations |
Potential 2-Aminosuccinimide Structures in Mollusc Proteins
J.S. Garavelli and M. Hirshberg
Protein Sci. (13) (suppl.) abstract 196, 2012. |
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Poster |
Framework For A Protein Ontology
Darren A. Natale, Cecilia N. Arighi, Lai-Su L. Yeh, Winona C. Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith, and Cathy H. Wu
Presented at caBIG Annual Meeting, Washington D.C., February 5-7, 2007. | |
Poster
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gridPIR: A central resource for genomic and proteomic information
Baris E. Suzek, Hongzhan Huang, Hsing-Kuo Hua, Peter McGarvey, Cathy H. Wu
Presented at caBIG Annual Meeting, Washington D.C., February 5-7, 2007. | |
Poster
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Science Gateway for Protein Analysis on the TeraGrid
Leslie Arminski, Hongzhan Huang, Peter McGarvey, Baris Suzek, Cathy Wu
Presented at caBIG Annual Meeting, Washington D.C., February 5-7, 2007. | |
Poster
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Object Modeling for Semantic Meaning
Baris E. Suzek, Hongzhan Huang, Hsing-Kuo Hua, Peter McGarvey, Cathy H. Wu
Presented at caBIG Annual Meeting, Washington D.C., February 5-7, 2007. |
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Poster
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PIRSF Protein Family Classification System
Anastasia Nikolskaya, Cecilia Arighi, Winona Barker, Hongzhan Huang, Raja Mazumder, Darren Natale, Sona Vasudevan, C.R. Vinayaka, Lai-Su Yeh, Cathy Wu
Presented at the Plant and Animal Genome XV Conference, San Diego, California, January 13-17, 2007. |
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Poster
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Framework For A Protein Ontology
Lai-Su L. Yeh, Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith Blake, Ti-Cheng Chang, Zhangzhi Hu, Hongfang Liu, Barry Smith, and Cathy H. Wu
Presented at the Plant and Animal Genome XV Conference, San Diego, California, January 13-17, 2007. |
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Poster
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The PIRSF system for protein classification, rule-based annotation, and ontology mapping
Darren A. Natale, Cecilia Arighi, Winona Barker, Zhangzhi Hu, Hongzhan Huang, Robel Kahsay, Raja Mazumder, Anastasia Nikolskaya, Sona Vasudevan, C. R. Vinayaka, Lai-Su Yeh, and Cathy H. Wu
Presented at the 14th Annual International Conference on Intelligent Systems for Molecular Biology, Fortaleza, Brazil, August 6-10, 2006. |
Abstract |
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Best Poster Award- Prediction of catalytic residues in
proteins using machine learning techniques
Petrova N and Wu CH
Presented at the Computational Systems Bioinformatics conference
(CSB2006), Stanford University, California, August 14-18, 2006. |
Abstract
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Poster
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The UniProt Consortium
The UniProt Consortium
Presented at the In-Silico Analysis of Proteins
Celebrating the 20th anniversary of Swiss-Prot Meeting, Fortaleza,
Brazil, July 30-August 04, 2006. |
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Poster
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RLIMS-P: A Rule-Based Literature Mining System
for Protein Phosphorylation
Hu ZZ, Yuan X, Torii M, Vijay-Shanker K, and Wu CH
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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NIAID-Biodefense Proteomics Research Programs
Peter McGarvey, Raja Mazumder, Hongzhan Huang, Jian Zhang and Cathy Wu
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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The iProXpress Knowledge System for Proteomic
Data Analysis
Hongzhan Huang, Zhang-Zhi Hu, Peter McGarvey and Cathy H. Wu
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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iProLINK – A Literature Mining Resource
at PIR (integrated Protein Literature INformation and Knowledge )
Hu ZZ, Liu H, Vijay-Shanker K, Mani I, and Wu CH
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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Protein Information Resource
Protein Information Resource
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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Prediction of catalytic residues in proteins
using machine learning techniques
Natalia Petrova and Cathy Wu
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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PIR and caBIG
Baris E. Suzek, Hongzhan Huang, Hsing-Kuo Hua, Peter McGarvey and Cathy
H. Wu
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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CUPID: Core and Unique Protein IDentification
Raja Mazumder and Darren Natale
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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UniProt Non-redundant Reference Cluster (UniRef)
Databases
UniProt Consortium
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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The PIRSF Protein Classification System as a
Basis for Automated UniProtKB Protein Annotation
Protein Information Resource
Presented at the In-Silico Analysis of Proteins Celebrating the 20th
anniversary of Swiss-Prot Meeting, Fortaleza, Brazil, July 30-August
04, 2006. |
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Poster
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Grid-Enablement of Protein Information Resource
(gridPIR)
Baris E. Suzek, Hongzhan Huang, Scott Chung, Hsing-Kuo Hua, Peter
McGarvey, Cathy H. Wu
Presented at the caBIG Annual Meeting, Arlington, VA, April 9-11, 2006. |
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Poster
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The iProXpress Knowledge System for Proteomic
Data Analysis
Zhang-Zhi Hu, Hongzhan Huang, Peter McGarvey, An Chi, Julio Valencia,
Cathy H. Wu
Presented at US HUPO Annual Conference 2006, Boston, MA, 2006. |
Abstract
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Poster
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Protein Information Resource (PIR): An integrated
bioinformatics resource for functional proteomics
McGarvey P, Hu Z.Z and Wu, C.H.
Presented at the 1st U.S. HUPO Annual Symposium, Washington, DC, 2005. |
Abstract
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Web Services for PIR/UniProt Databases
Baris E. Suzek, Hongzhan Huang, Scott Chung, Hsing-Kuo Hua, Peter
McGarvey, Zhangzhi Hu, Cathy Wu
Presented at the 13th Annual International Conference on Intelligence
Systems for Molecular Biology, Detroit, MI, 2005.
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Abstract
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Literature Data Mining and Protein Ontology
Development at the Protein Information Resource (PIR)
Hu ZZ, Mani I, Liu H, Hermoso V, Fang C, Vijay-Shanker K, Nikolskaya A,
Natale DA, and Wu CH
Presented at the 13th Annual International Conference on Intelligence
Systems for Molecular Biology, Detroit, MI, 2005.
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Abstract
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Poster
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UniProt: the Universal Protein Resource
L.S. Yeh, UniProt Consortium
Presented at the 13th Annual International Conference on Intelligence
Systems for Molecular Biology, Detroit, MI, 2005.
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Abstract
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Poster
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PIRSF Protein Family Classification System
Anastasia Nikolskaya, Sehee Chung, Hongzhan Huang, Raja Mazumder,
Darren Natale, Lai-Su Yeh, Cathy H. Wu
Presented at the 13th Annual International Conference on Intelligence
Systems for Molecular Biology, Detroit, 2005
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Abstract
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Poster
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Prediction of catalytic residues in proteins using
machine-learning techniques
Natalia V. Petrova, Cathy H. Wu
Presented at the 13th Annual International Conference on Intelligence
Systems for Molecular Biology, Detroit, 2005
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Abstract
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PIR Non-Redundant Reference
Protein Database (PIR-NREF)
Baris Suzek
Sixth Annual International Conference on Research in Computational
Molecular Biology, April 18-27, 2002, Washington, D.C. |
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Superfamily System for
Functional Classification of Protein Sequences: Recognizing Cellular
Phosphoesterases in Sequenced Genomes
W. C. Barker, H. Huang, L.S. Yeh, and C.H. Wu
Presented at the 41st Annual Meeting for the American Society for Cell
Biology, Washington, D.C., 2001 |
Abstract
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PIR and iProClass for
Functional Genomics/Proteomics
Barker, W.C., Castro-Alvear, J., Chen, Y., Hu, Z., Huang, H., Ledley,
R.S., Lewis, K.C., Orcutt, B.C., Suzek, B., Vinayaka, C.R., Wu, C.H.,
Yeh, L.L., and Zhang, J
Presented at the 41st Annual Meeting for the American Society for Cell
Biology, Washington, D.C., 2001 |
Abstract |
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Comprehensive Superfamily and
Function Classification of Protein Sequences
Huang, H., Barker, W.C., Yeh, L.S., and Wu, C.H.
Presented at the Fifth Annual Conference On Computational Genomics,
Baltimore, Maryland, 2001 |
Abstract
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PIR and iProClass for
Functional Genomics/Proteomics
Barker, W.C., Castro-Alvear, J., Chen, Y., Hu, Z., Huang, H., Ledley,
R.S., Lewis, K.C., Orcutt, B.C., Suzek, B., Vinayaka, C.R., Wu, C.H.,
Yeh, L.L., and Zhang, J
Presented at the Fifth Annual Conference On Computational Genomics,
Baltimore, Maryland, 2001 |
Abstract |
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PIR Web-Based Tools and
Databases for Genomic and Proteomic Research
Barker, W.C., Chen, Y., Hu, Z., Huang, H., Lewis, K., Orcutt, B.C.,
Yeh, L.L., Wu, C.H.
Presented at the 9th International Conference on Intelligent Systems
for Molecular Biology (ISMB), Copenhagen, Denmark, 2001 |
Abstract |
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Protein Information Resource:
A Community Resource for Expert Annotation of Protein Data
Barker, Winona. C., Chen, Yongxing, Huang, Hongzhan, Ledley, Robert S.,
Lewis, Kali C., Orcutt, Bruce C., Vinayaka, C.R., Yeh, Lai-Su L.,
Zhang, Jian, Wu, Cathy H
Presented at the 15th Symposium of the Protein Society, Philadelphia,
PA, 2001 |
Abstract |
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iProClass: An Integrated
Protein Classification Database for Proteomics
Wu, C. H., Chen, Y., Huang, H., Barker, W.C.
Presented at the 15th Symposium of the Protein Society, Philadelphia,
PA, 2001 |
Abstract |
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Protein Information Resource:
A Community Resource for Expert Annotation of Protein Data
Cathy H. Wu and Winona C. Barker
Presented at the Biophysical Society 45th Annual Meeting, Boston, MA,
2001 |
Abstract |
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Integrated System for
Comprehensive Classification of Protein Sequences
H. Huang, W. C. Barker, L.S. Yeh, and C.H. Wu
Presented at the 13th International Congress for Methods of Protein
Structure Analysis (MPSA), 2000. |
Abstract |
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PIR-Class: An
Object-Relational Protein Classification Database for Sequence
Annotation and Genome Research
Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, and Winona C. Barker
Presented at the ISMB meeting, 2000 |
Abstract |
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Object-Relational Protein
Sequence Database
Chunlin Xiao, Lai-Su Yeh, Zhenling Hou, Bruce Orcutt, and Cathy Wu
Presented at the 4th Annual Conference on Computational Genomics,
Baltimore, MD, 2000 |
Abstract |
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iProClass: An Integrated,
Comprehensive, and Annotated Protein Classification Database
Cathy H. Wu, Chunlin Xiao, Zhenglin Hou, Hongzhan Huang, and Winona C.
Barker
Presented at the 4th Annual Conference on Computational Genomics,
Baltimore, MD 2000 |
Abstract |
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Protein Active Site Motifs and
Structure/Function Relationships
Zhenglin Hou, Chunlin Xiao, Hongzhan Huang, and Cathy H. Wu
Presented at the 4th Annual Conference on Computational Genomics,
Baltimore, MD, 2000 |
Abstract |
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Cofactor-Binding Homology Domains of the Hybrid
Cluster Proteins and the Carbon-monoxide Dehydrogenase
Nickel-Containing Chains
Garavelli, J.S., Huang, H., Miller, D.J.
Protein Society Meeting, August 4 - 10, 2000, San Diego, CA |
Abstract |
Poster |
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